The transcriptome of Populus in elevated CO2.
Identifieur interne : 003F36 ( Main/Exploration ); précédent : 003F35; suivant : 003F37The transcriptome of Populus in elevated CO2.
Auteurs : Gail Taylor [Royaume-Uni] ; Nathaniel R. Street ; Penny J. Tricker ; Andreas Sjödin ; Laura Graham ; Oskar Skogström ; Carlo Calfapietra ; Giuseppe Scarascia-Mugnozza ; Stefan JanssonSource :
- The New phytologist [ 0028-646X ] ; 2005.
Descripteurs français
- KwdFr :
- Adaptation physiologique (MeSH), Analyse de profil d'expression de gènes (MeSH), Atmosphère (MeSH), Dioxyde de carbone (pharmacologie), Facteurs temps (MeSH), Populus (effets des médicaments et des substances chimiques), Populus (génétique), Populus (métabolisme), Régulation de l'expression des gènes végétaux (effets des médicaments et des substances chimiques), Séquençage par oligonucléotides en batterie (MeSH), Étiquettes de séquences exprimées (MeSH).
- MESH :
- effets des médicaments et des substances chimiques : Populus, Régulation de l'expression des gènes végétaux.
- génétique : Populus.
- métabolisme : Populus.
- pharmacologie : Dioxyde de carbone.
- Adaptation physiologique, Analyse de profil d'expression de gènes, Atmosphère, Facteurs temps, Séquençage par oligonucléotides en batterie, Étiquettes de séquences exprimées.
English descriptors
- KwdEn :
- Adaptation, Physiological (MeSH), Atmosphere (MeSH), Carbon Dioxide (pharmacology), Expressed Sequence Tags (MeSH), Gene Expression Profiling (MeSH), Gene Expression Regulation, Plant (drug effects), Oligonucleotide Array Sequence Analysis (MeSH), Populus (drug effects), Populus (genetics), Populus (metabolism), Time Factors (MeSH).
- MESH :
- chemical , pharmacology : Carbon Dioxide.
- drug effects : Gene Expression Regulation, Plant, Populus.
- genetics : Populus.
- metabolism : Populus.
- Adaptation, Physiological, Atmosphere, Expressed Sequence Tags, Gene Expression Profiling, Oligonucleotide Array Sequence Analysis, Time Factors.
Abstract
The consequences of increasing atmospheric carbon dioxide for long-term adaptation of forest ecosystems remain uncertain, with virtually no studies undertaken at the genetic level. A global analysis using cDNA microarrays was conducted following 6 yr exposure of Populus x euramericana (clone I-214) to elevated [CO(2)] in a FACE (free-air CO(2) enrichment) experiment. Gene expression was sensitive to elevated [CO(2)] but the response depended on the developmental age of the leaves, and < 50 transcripts differed significantly between different CO(2) environments. For young leaves most differentially expressed genes were upregulated in elevated [CO(2)], while in semimature leaves most were downregulated in elevated [CO(2)]. For transcripts related only to the small subunit of Rubisco, upregulation in LPI 3 and downregulation in LPI 6 leaves in elevated CO(2) was confirmed by anova. Similar patterns of gene expression for young leaves were also confirmed independently across year 3 and year 6 microarray data, and using real-time RT-PCR. This study provides the first clues to the long-term genetic expression changes that may occur during long-term plant response to elevated CO(2).
DOI: 10.1111/j.1469-8137.2005.01450.x
PubMed: 15948837
Affiliations:
Links toward previous steps (curation, corpus...)
Le document en format XML
<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">The transcriptome of Populus in elevated CO2.</title><author><name sortKey="Taylor, Gail" sort="Taylor, Gail" uniqKey="Taylor G" first="Gail" last="Taylor">Gail Taylor</name><affiliation wicri:level="1"><nlm:affiliation>School of Biological Sciences, Bassett Crescent East, University of Southampton, SO16 7PX, UK. g.taylor@soton.ac.uk</nlm:affiliation><country xml:lang="fr">Royaume-Uni</country><wicri:regionArea>School of Biological Sciences, Bassett Crescent East, University of Southampton, SO16 7PX</wicri:regionArea><wicri:noRegion>SO16 7PX</wicri:noRegion></affiliation></author><author><name sortKey="Street, Nathaniel R" sort="Street, Nathaniel R" uniqKey="Street N" first="Nathaniel R" last="Street">Nathaniel R. Street</name></author><author><name sortKey="Tricker, Penny J" sort="Tricker, Penny J" uniqKey="Tricker P" first="Penny J" last="Tricker">Penny J. Tricker</name></author><author><name sortKey="Sjodin, Andreas" sort="Sjodin, Andreas" uniqKey="Sjodin A" first="Andreas" last="Sjödin">Andreas Sjödin</name></author><author><name sortKey="Graham, Laura" sort="Graham, Laura" uniqKey="Graham L" first="Laura" last="Graham">Laura Graham</name></author><author><name sortKey="Skogstrom, Oskar" sort="Skogstrom, Oskar" uniqKey="Skogstrom O" first="Oskar" last="Skogström">Oskar Skogström</name></author><author><name sortKey="Calfapietra, Carlo" sort="Calfapietra, Carlo" uniqKey="Calfapietra C" first="Carlo" last="Calfapietra">Carlo Calfapietra</name></author><author><name sortKey="Scarascia Mugnozza, Giuseppe" sort="Scarascia Mugnozza, Giuseppe" uniqKey="Scarascia Mugnozza G" first="Giuseppe" last="Scarascia-Mugnozza">Giuseppe Scarascia-Mugnozza</name></author><author><name sortKey="Jansson, Stefan" sort="Jansson, Stefan" uniqKey="Jansson S" first="Stefan" last="Jansson">Stefan Jansson</name></author></titleStmt><publicationStmt><idno type="wicri:source">PubMed</idno><date when="2005">2005</date><idno type="RBID">pubmed:15948837</idno><idno type="pmid">15948837</idno><idno type="doi">10.1111/j.1469-8137.2005.01450.x</idno><idno type="wicri:Area/Main/Corpus">004026</idno><idno type="wicri:explorRef" wicri:stream="Main" wicri:step="Corpus" wicri:corpus="PubMed">004026</idno><idno type="wicri:Area/Main/Curation">004026</idno><idno type="wicri:explorRef" wicri:stream="Main" wicri:step="Curation">004026</idno><idno type="wicri:Area/Main/Exploration">004026</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en">The transcriptome of Populus in elevated CO2.</title><author><name sortKey="Taylor, Gail" sort="Taylor, Gail" uniqKey="Taylor G" first="Gail" last="Taylor">Gail Taylor</name><affiliation wicri:level="1"><nlm:affiliation>School of Biological Sciences, Bassett Crescent East, University of Southampton, SO16 7PX, UK. g.taylor@soton.ac.uk</nlm:affiliation><country xml:lang="fr">Royaume-Uni</country><wicri:regionArea>School of Biological Sciences, Bassett Crescent East, University of Southampton, SO16 7PX</wicri:regionArea><wicri:noRegion>SO16 7PX</wicri:noRegion></affiliation></author><author><name sortKey="Street, Nathaniel R" sort="Street, Nathaniel R" uniqKey="Street N" first="Nathaniel R" last="Street">Nathaniel R. Street</name></author><author><name sortKey="Tricker, Penny J" sort="Tricker, Penny J" uniqKey="Tricker P" first="Penny J" last="Tricker">Penny J. Tricker</name></author><author><name sortKey="Sjodin, Andreas" sort="Sjodin, Andreas" uniqKey="Sjodin A" first="Andreas" last="Sjödin">Andreas Sjödin</name></author><author><name sortKey="Graham, Laura" sort="Graham, Laura" uniqKey="Graham L" first="Laura" last="Graham">Laura Graham</name></author><author><name sortKey="Skogstrom, Oskar" sort="Skogstrom, Oskar" uniqKey="Skogstrom O" first="Oskar" last="Skogström">Oskar Skogström</name></author><author><name sortKey="Calfapietra, Carlo" sort="Calfapietra, Carlo" uniqKey="Calfapietra C" first="Carlo" last="Calfapietra">Carlo Calfapietra</name></author><author><name sortKey="Scarascia Mugnozza, Giuseppe" sort="Scarascia Mugnozza, Giuseppe" uniqKey="Scarascia Mugnozza G" first="Giuseppe" last="Scarascia-Mugnozza">Giuseppe Scarascia-Mugnozza</name></author><author><name sortKey="Jansson, Stefan" sort="Jansson, Stefan" uniqKey="Jansson S" first="Stefan" last="Jansson">Stefan Jansson</name></author></analytic><series><title level="j">The New phytologist</title><idno type="ISSN">0028-646X</idno><imprint><date when="2005" type="published">2005</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Adaptation, Physiological (MeSH)</term><term>Atmosphere (MeSH)</term><term>Carbon Dioxide (pharmacology)</term><term>Expressed Sequence Tags (MeSH)</term><term>Gene Expression Profiling (MeSH)</term><term>Gene Expression Regulation, Plant (drug effects)</term><term>Oligonucleotide Array Sequence Analysis (MeSH)</term><term>Populus (drug effects)</term><term>Populus (genetics)</term><term>Populus (metabolism)</term><term>Time Factors (MeSH)</term></keywords><keywords scheme="KwdFr" xml:lang="fr"><term>Adaptation physiologique (MeSH)</term><term>Analyse de profil d'expression de gènes (MeSH)</term><term>Atmosphère (MeSH)</term><term>Dioxyde de carbone (pharmacologie)</term><term>Facteurs temps (MeSH)</term><term>Populus (effets des médicaments et des substances chimiques)</term><term>Populus (génétique)</term><term>Populus (métabolisme)</term><term>Régulation de l'expression des gènes végétaux (effets des médicaments et des substances chimiques)</term><term>Séquençage par oligonucléotides en batterie (MeSH)</term><term>Étiquettes de séquences exprimées (MeSH)</term></keywords><keywords scheme="MESH" type="chemical" qualifier="pharmacology" xml:lang="en"><term>Carbon Dioxide</term></keywords><keywords scheme="MESH" qualifier="drug effects" xml:lang="en"><term>Gene Expression Regulation, Plant</term><term>Populus</term></keywords><keywords scheme="MESH" qualifier="effets des médicaments et des substances chimiques" xml:lang="fr"><term>Populus</term><term>Régulation de l'expression des gènes végétaux</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Populus</term></keywords><keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>Populus</term></keywords><keywords scheme="MESH" qualifier="metabolism" xml:lang="en"><term>Populus</term></keywords><keywords scheme="MESH" qualifier="métabolisme" xml:lang="fr"><term>Populus</term></keywords><keywords scheme="MESH" qualifier="pharmacologie" xml:lang="fr"><term>Dioxyde de carbone</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Adaptation, Physiological</term><term>Atmosphere</term><term>Expressed Sequence Tags</term><term>Gene Expression Profiling</term><term>Oligonucleotide Array Sequence Analysis</term><term>Time Factors</term></keywords><keywords scheme="MESH" xml:lang="fr"><term>Adaptation physiologique</term><term>Analyse de profil d'expression de gènes</term><term>Atmosphère</term><term>Facteurs temps</term><term>Séquençage par oligonucléotides en batterie</term><term>Étiquettes de séquences exprimées</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">The consequences of increasing atmospheric carbon dioxide for long-term adaptation of forest ecosystems remain uncertain, with virtually no studies undertaken at the genetic level. A global analysis using cDNA microarrays was conducted following 6 yr exposure of Populus x euramericana (clone I-214) to elevated [CO(2)] in a FACE (free-air CO(2) enrichment) experiment. Gene expression was sensitive to elevated [CO(2)] but the response depended on the developmental age of the leaves, and < 50 transcripts differed significantly between different CO(2) environments. For young leaves most differentially expressed genes were upregulated in elevated [CO(2)], while in semimature leaves most were downregulated in elevated [CO(2)]. For transcripts related only to the small subunit of Rubisco, upregulation in LPI 3 and downregulation in LPI 6 leaves in elevated CO(2) was confirmed by anova. Similar patterns of gene expression for young leaves were also confirmed independently across year 3 and year 6 microarray data, and using real-time RT-PCR. This study provides the first clues to the long-term genetic expression changes that may occur during long-term plant response to elevated CO(2).</div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">15948837</PMID><DateCompleted><Year>2005</Year><Month>08</Month><Day>16</Day></DateCompleted><DateRevised><Year>2020</Year><Month>09</Month><Day>30</Day></DateRevised><Article PubModel="Print"><Journal><ISSN IssnType="Print">0028-646X</ISSN><JournalIssue CitedMedium="Print"><Volume>167</Volume><Issue>1</Issue><PubDate><Year>2005</Year><Month>Jul</Month></PubDate></JournalIssue><Title>The New phytologist</Title><ISOAbbreviation>New Phytol</ISOAbbreviation></Journal><ArticleTitle>The transcriptome of Populus in elevated CO2.</ArticleTitle><Pagination><MedlinePgn>143-54</MedlinePgn></Pagination><Abstract><AbstractText>The consequences of increasing atmospheric carbon dioxide for long-term adaptation of forest ecosystems remain uncertain, with virtually no studies undertaken at the genetic level. A global analysis using cDNA microarrays was conducted following 6 yr exposure of Populus x euramericana (clone I-214) to elevated [CO(2)] in a FACE (free-air CO(2) enrichment) experiment. Gene expression was sensitive to elevated [CO(2)] but the response depended on the developmental age of the leaves, and < 50 transcripts differed significantly between different CO(2) environments. For young leaves most differentially expressed genes were upregulated in elevated [CO(2)], while in semimature leaves most were downregulated in elevated [CO(2)]. For transcripts related only to the small subunit of Rubisco, upregulation in LPI 3 and downregulation in LPI 6 leaves in elevated CO(2) was confirmed by anova. Similar patterns of gene expression for young leaves were also confirmed independently across year 3 and year 6 microarray data, and using real-time RT-PCR. This study provides the first clues to the long-term genetic expression changes that may occur during long-term plant response to elevated CO(2).</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Taylor</LastName><ForeName>Gail</ForeName><Initials>G</Initials><AffiliationInfo><Affiliation>School of Biological Sciences, Bassett Crescent East, University of Southampton, SO16 7PX, UK. g.taylor@soton.ac.uk</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Street</LastName><ForeName>Nathaniel R</ForeName><Initials>NR</Initials></Author><Author ValidYN="Y"><LastName>Tricker</LastName><ForeName>Penny J</ForeName><Initials>PJ</Initials></Author><Author ValidYN="Y"><LastName>Sjödin</LastName><ForeName>Andreas</ForeName><Initials>A</Initials></Author><Author ValidYN="Y"><LastName>Graham</LastName><ForeName>Laura</ForeName><Initials>L</Initials></Author><Author ValidYN="Y"><LastName>Skogström</LastName><ForeName>Oskar</ForeName><Initials>O</Initials></Author><Author ValidYN="Y"><LastName>Calfapietra</LastName><ForeName>Carlo</ForeName><Initials>C</Initials></Author><Author ValidYN="Y"><LastName>Scarascia-Mugnozza</LastName><ForeName>Giuseppe</ForeName><Initials>G</Initials></Author><Author ValidYN="Y"><LastName>Jansson</LastName><ForeName>Stefan</ForeName><Initials>S</Initials></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType><PublicationType UI="D013485">Research Support, Non-U.S. Gov't</PublicationType><PublicationType UI="D013486">Research Support, U.S. Gov't, Non-P.H.S.</PublicationType></PublicationTypeList></Article><MedlineJournalInfo><Country>England</Country><MedlineTA>New Phytol</MedlineTA><NlmUniqueID>9882884</NlmUniqueID><ISSNLinking>0028-646X</ISSNLinking></MedlineJournalInfo><ChemicalList><Chemical><RegistryNumber>142M471B3J</RegistryNumber><NameOfSubstance UI="D002245">Carbon Dioxide</NameOfSubstance></Chemical></ChemicalList><CitationSubset>IM</CitationSubset><MeshHeadingList><MeshHeading><DescriptorName UI="D000222" MajorTopicYN="N">Adaptation, Physiological</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D001272" MajorTopicYN="N">Atmosphere</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D002245" MajorTopicYN="N">Carbon Dioxide</DescriptorName><QualifierName UI="Q000494" MajorTopicYN="Y">pharmacology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D020224" MajorTopicYN="N">Expressed Sequence Tags</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D020869" MajorTopicYN="Y">Gene Expression Profiling</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D018506" MajorTopicYN="N">Gene Expression Regulation, Plant</DescriptorName><QualifierName UI="Q000187" MajorTopicYN="Y">drug effects</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D020411" MajorTopicYN="N">Oligonucleotide Array Sequence Analysis</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D032107" MajorTopicYN="N">Populus</DescriptorName><QualifierName UI="Q000187" MajorTopicYN="Y">drug effects</QualifierName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName><QualifierName UI="Q000378" MajorTopicYN="N">metabolism</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D013997" MajorTopicYN="N">Time Factors</DescriptorName></MeshHeading></MeshHeadingList></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="pubmed"><Year>2005</Year><Month>6</Month><Day>14</Day><Hour>9</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="medline"><Year>2005</Year><Month>8</Month><Day>17</Day><Hour>9</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="entrez"><Year>2005</Year><Month>6</Month><Day>14</Day><Hour>9</Hour><Minute>0</Minute></PubMedPubDate></History><PublicationStatus>ppublish</PublicationStatus><ArticleIdList><ArticleId IdType="pubmed">15948837</ArticleId><ArticleId IdType="pii">NPH1450</ArticleId><ArticleId IdType="doi">10.1111/j.1469-8137.2005.01450.x</ArticleId></ArticleIdList></PubmedData></pubmed><affiliations><list><country><li>Royaume-Uni</li></country></list><tree><noCountry><name sortKey="Calfapietra, Carlo" sort="Calfapietra, Carlo" uniqKey="Calfapietra C" first="Carlo" last="Calfapietra">Carlo Calfapietra</name><name sortKey="Graham, Laura" sort="Graham, Laura" uniqKey="Graham L" first="Laura" last="Graham">Laura Graham</name><name sortKey="Jansson, Stefan" sort="Jansson, Stefan" uniqKey="Jansson S" first="Stefan" last="Jansson">Stefan Jansson</name><name sortKey="Scarascia Mugnozza, Giuseppe" sort="Scarascia Mugnozza, Giuseppe" uniqKey="Scarascia Mugnozza G" first="Giuseppe" last="Scarascia-Mugnozza">Giuseppe Scarascia-Mugnozza</name><name sortKey="Sjodin, Andreas" sort="Sjodin, Andreas" uniqKey="Sjodin A" first="Andreas" last="Sjödin">Andreas Sjödin</name><name sortKey="Skogstrom, Oskar" sort="Skogstrom, Oskar" uniqKey="Skogstrom O" first="Oskar" last="Skogström">Oskar Skogström</name><name sortKey="Street, Nathaniel R" sort="Street, Nathaniel R" uniqKey="Street N" first="Nathaniel R" last="Street">Nathaniel R. Street</name><name sortKey="Tricker, Penny J" sort="Tricker, Penny J" uniqKey="Tricker P" first="Penny J" last="Tricker">Penny J. Tricker</name></noCountry><country name="Royaume-Uni"><noRegion><name sortKey="Taylor, Gail" sort="Taylor, Gail" uniqKey="Taylor G" first="Gail" last="Taylor">Gail Taylor</name></noRegion></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
EXPLOR_STEP=$WICRI_ROOT/Bois/explor/PoplarV1/Data/Main/Exploration
HfdSelect -h $EXPLOR_STEP/biblio.hfd -nk 003F36 | SxmlIndent | more
Ou
HfdSelect -h $EXPLOR_AREA/Data/Main/Exploration/biblio.hfd -nk 003F36 | SxmlIndent | more
Pour mettre un lien sur cette page dans le réseau Wicri
{{Explor lien
|wiki= Bois
|area= PoplarV1
|flux= Main
|étape= Exploration
|type= RBID
|clé= pubmed:15948837
|texte= The transcriptome of Populus in elevated CO2.
}}
Pour générer des pages wiki
HfdIndexSelect -h $EXPLOR_AREA/Data/Main/Exploration/RBID.i -Sk "pubmed:15948837" \
| HfdSelect -Kh $EXPLOR_AREA/Data/Main/Exploration/biblio.hfd \
| NlmPubMed2Wicri -a PoplarV1
| This area was generated with Dilib version V0.6.37. |  |